![]() ![]() surf.gii files (two hemispheres * two inflations). Navigate to where you put the images from "surface (GIFTI) brain plotting", and change the Files of type drop-down to "Surface Files (*.surf.gii)", then (see this post for a bit more about file types).įile -> Open File from the top menus to open a standard file selection dialog. ![]() Volumetric blobs on, and GIFTI surface files to plot surface blobs on To first open images to use as underlays: a NIfTI volumetric underlay to plot Skipped loading anything, Workbench opens with a blank screen. I won't cover them in this tutorial, though. Note: spec and scene files are very useful, and a big reason to use Workbench, because they let you save collections of images and visualizations, which can save a massive amount of time. Click the Skip button to load the main program. Open the Workbench GUI (e.g., by double-clicking wb_view.exe).Ī command window will open (just ignore it), as well as a interactive box prompting you to open a spec or scene file. I suggest underlays from the HCP S1200 release for volumetric (MNI) and fsLR surfaces I converted the fsaverage5 surfaces from our local FreeSurfer installation, but FreeSurfer provides many more than the pair I put into osf. rnw files should be kept in separate directories if you're going to compile the knitr tutorials.)Īside: Only the files from the osf site are needed for this tutorial, but you will likely want more anatomic underlays than these. Download all of the files under "knitr tutorials", the "surface (GIFTI) brain plotting" and "volumetric (NIfTI) brain plotting" subdirectories. Workbench doesn't come with any images, so this tutorial will use ones from my knitr tutorials, available at. wb_command.exe is not a GUI program (nothing much will happen if you double-click it!), but is useful for various functions see this post and this documentation for more. If you don't want to navigate to this directory each time to start Workbench, make a shortcut to wb_view.exe and put it on your desktop or in a handy menu.Īside: wb_command.exe is in the same directory as wb_view.exe. ![]() Double-click wb_view to start the program. Navigate through until you find wb_view in my case it's at D:\Workbench\workbench-windows64-v1.4.2\bin_windows64\wb_view.exe. On my windows box I put the download into d:\Workbench\, unzipped it, and got a bunch of subdirectories. On Windows and Mac you don't "install" Workbench, but just unzip the download then double-click I have a few other posts on Workbench and HCP-related topics, mostly linked from the "Connectome Workbench: 1st steps" post.Ĭonnectome Workbench has versions for Windows, Mac OS, and Linux just click the download link for your OS (Linux types can also install Workbench via NeuroDebian). This new version of Workbench has some nice features (only a few of which are described here!), so I suggest you try this one rather than a previous version. Here is an updated version of my introductory tutorial for the Connectome Workbench, written for Workbench 1.4.2. ![]()
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